Does the fact that disorder increases with time (the entropy thermodynamic law), contradict the fact that there is order in chaos (the fact that an underlying order can be found in seemingly chaotic systems).
The 2nd Law of Thermodynamics is often misinterpreted, especially by creationists. It is important to remember that the 2nd Law of Thermodynamics applies to closed systems only. As far as I know we have no means of establishing whether the universe is a closed system.
Although I know some astronomically knowledgable JWs who might agree with parts of Big-Bang theory --- arguing that it could be (part of) the instruments god chose to create the universe --- they generally contend also that the universe is by no means a closed system.
God, as a source of dynamic energy injects energy into the universe; I've often heard this argument used in discussions about the moment when our Sun would have burnt all its fuel and might turn into a supernova that would likely destroy our solar system, and how this conflicts with the scenario of everlasting life on Earth.
Where this viewpoint originates is not clear to me. It might me buried somewhere in the literature. I never made the effort to dig it out. Maybe AlanF has a pointer?
Anyway, please find below a reference to some more explanations:
As will be shown later on, it is only the over-all entropy of a complete, or closed system that must increase when spontaneous change occurs. In the case of spontaneously interacting sub-systems of a closed system, some may gain entropy, while others may lose entropy. For example, it is a fundamental axiom of thermodynamics that when heat flows from subsystem A to subsystem B, the entropy of A decreases and the entropy of B increases. The statement that an increase in order can only occur as the result of a directional mechanism, program, or code is misleading. Any process that can be demonstrated to take place with an increase in order/decrease in entropy is arbitrarily deemed to be the consequence of an undefined "directional mechanism."
You can find this and more at:
http://talkorigins.org/faqs/thermo/probability.html