I could tell that my wife was having trouble over the past few days dealing after we talked about some of my doubts. Well, I found out that she has been telling some of her close friends about the situation and is really scared and feeling insecure. I totally understand that. I don't want to lose her and I expressed that. I love her unconditionally.
Anyways, we talked about some of the issues I have and she listened and tryed to reason with me. In the end though, it all boiled down to this.
"I know the WT is God's Organization, so I can look past all these imperfections."
Praying to Jehovah as a suicidal teenager probably saved her life at that time. She also claims to have seen Jehovah in action throughout her life. As a result of her past experience, she can look past any imperfection or seeming contradiction.
I am meeting with the CO this coming weekend with my wife and 2 other elders. I might bring up some of these issues then. We will see.