I'm trying to use the search feature to find some old posts on 'intellectual dishonesty'.
The one search that seems to yield the most info right now is using the word 'dishonest' in the 'body only' for all posts by poster 'tetrapod.sapien'. In one of his posts he mentions that he set out to use the society's publications (especially the Creation Book) to strengthen his faith. Instead, it shattered it when he looked up the quotes.
From those referenced threads, I think you find other links.
It seems that AlanF did much research and writing on the subject and I would guess that Farkel did as well. These were two exceptionally prolific posters a few years ago. Farkel still posts from time to time but AlanF hasn't been on JWD for about 2 years, I think.
ithinkisee chronicled his own departure and then the steps he took to help his wife (freedomlover / freedomloverr) awaken. Here is a link to one of his posts: http://www.jehovahs-witness.com/6/102851/1777326/post.ashx#1777326 where he mentions some publications that have misquotes. In fact, Ithinkisee's entire post history may give you some ideas to share with your wife.
For AlanF I used the word 'misquote' and found this link: http://www.jehovahs-witness.com/10/97358/1671605/post.ashx#1671605
Also, another by AlanF where he mentions that he wrote to the society about the misquotes: http://www.jehovahs-witness.com/6/8898/105359/post.ashx#105359 You may find each of those thread interesting from top to bottom (whereas my links are just to the one specific post).
You may want to google 'Alan Feuerbacher' for links to AlanF's documents. They may prove to be invaluable to you as they present very well thought out and clearly presented rational discussion of a number of JW topics. On one googled site, there are also dozens of links to other people's presentations as well.
Good Luck with you new project! I may have focused on just one area and truly hope others respond from a different angle for you.
-Aude.