Evolution has been directly observed in bacteria. Bacteria have gained abilities they previously did not have. This is a fact.
It is acknowledged on both sides of the issue that natural selection happens frequently and before our eyes. What has not been observed is the change of one species into what is clearly another species.
Bacteria have a number of mechanisms to bring substances into its cell. If it loses a mechanism, it is no longer able to bring the corresponding substances in. Therefore that substance cannot harm it. Keep in mind that this is the result of loss of genetic information, not a gain. Just like albinoism is a loss of genetic information.
Natural selection does not prove goo-to-you evolution any more than my jumping a mud puddle proves that I can jump the Grand Canyon in a single leap.
Atavisms occasionally manifest themselves. This is a fact. This goes against special creation but is actually predicted and supported by evolutionary theory.
Atavism per http://encarta.msn.com/encnet/features/Dictionary/DictionaryResults.aspx
1. reappearance of genetic feature: the recurrence of a genetically controlled feature in an organism after it has been absent for several generations, usually because of an accidental recombination of genes.
In other words, it is the expression of genes that are already present. There is no new information or genes.
DNA contains genes (junk, retroviral, etc). This is a fact. It proves common descent, which again goes against creation but is supported by evolutionary theory.
To declare a gene ‘junk’, one must have absolute knowledge of all genes. We don’t have such knowledge. It would be much more accurate to state “We don’t know what this gene is for.” Basically the ‘vestigial argument’ on the DNA level.
So far nothing is proven. The items that you have cited can point to either evolution or creation.