So why do they feel the need to condemn all those that hold religious views?
I'm not sure I've ever condemned all those that hold religious views, but I will try to answer anyway. The problem is that religious views hold too much sway in society and government. I want everyone to be free to hold whatever religious views they like and the only limit on the practice of those views being where it conflicts with the rights of others.
As far as I am concerned this view protects religious practice since protecting people from having other people's religious views imposed on them works as much to protect minority religions as it does the secular population.