ILoveTTATT2:
Do you have further proof that this was not Joseph Franklin Rutherford?
I see you also don't understand the concept of 'burden of proof'. I am under no obligation to affirm a negative claim. Your entire body of evidence is that a person with the same initials was a member of Knights of Pythias and your burning desire for Joseph Franklin Rutherford to have spent his earlier years in association with some 'secret order' (which ultimately has no bearing on anything anyway since it doesn't imply any ongoing agreement or affiliation).
Yet we know there was in fact a John F. Rutherford who was originally from Missouri and who we know was in the Knights of Pythias and was president of a lumber company with many members who were also members of the Knights of Pythias.
Added to this is the fact that although Joseph F. Rutherford is stated in some sources to be from Boonville, official records actually say that he was from Versaille, Missouri. Hence it is quite possible that some sources have previously conflated John F. Rutherford with the early history of Joseph F. Rutherford; though despite your incredulity, it would not be at all remarkable for there to be two J. F. Rutherfords in the same town.