I've never understood what tax exemption status had to do with freedom. I pay lots of taxes yet that does not encroach my freedoms. By the government providing tax exemptions for religions, they are unfairly favoring them as opposed to other businesses. The simple fact is that religion is a business like any other business. To the extend they do charitable works that can be proven, I'm fine with allowing an exemption on that portion of their profits. However, the teaching of religious practices should not classify as a charitable work.
I agree the government shouldn't be involved in the regulating of religion. However, it does seem that many religions like Scientology and JWs seem to hurt people and then hide under the First Amendment. Freedom of religion should be equal to other freedoms. Here in the US, it seems that freedom is religion is more important than our other freedoms. They should simply have to face the consequences of the actions their freedom allows.
If I slander someone, I can be held civilly liable and could be ordered to pay damages. Yet when the WT or Scientology slanders someone by reading off their name as a person that is disconnected or disfellowshipped (or no longer a JW which is code) and the person suffers harm as a result, they are not held liable. It's not regulation in my eyes, they can do what they want. But there is a price to pay for every action.
I understand religion still has a highly favored status in the US. I appreciate the diversity of religions in my country and while I think they are all BS, they do provide a sense of community to some and some are involved in providing charitable acts (real ones not recruiting for their religion). I just think it needs to be balanced with the rights of the individual and as a tax payer, it pisses me off that I am supporting ANY religion by paying my share and the share they don't pay.