When the Rasor has given a clean shave, it has not gotten rid of the hair. There is more under the skin that does not meet the eye.
The point is that the complexity (or how much science has yet to uncover) of the natural universe is the same for everyone, no matter your beliefs regarding gods. The natural universe that you look at is the same one I look at. You however choose to make it infinitely more complex by adding an infinitely powerful creator being to that picture.