SNG,
If you are looking for an ethical/moral model to use for my concept, which seems to be the thrust of this thread, the best one I can come up with is R. Daneel Olivaw (from Asimov's Foundation series, and other novels) and his deliberations with Giskard over the Laws. Eventually they arrived (on their own) with a need to apply a Zeroth Law that took precedence over the First Law. But, application of the Zeroth Law necessitated an ability to foreknow the impacts of any course of action/inaction on humanity as a species. Without knowing the outcome, Daneel postulated, it is impossible to know whether the action/inaction would result in harm or benefit. Killing a specific human (in violation of the First Law) was justified once he knew the outcome to the species would be beneficial.
Let's try applying that model on a grander scale. I say again, without being able to know the eventual impacts to the species it is impossible to know what "bad" or "good" is except in a metaphorical way. You look at a specific instance and judge the outcome to be "bad," but you really have no basis in fact to make such a judgment because you do not know what the eventual results to the species would be if things had occurred differently, do you?
In evolutionary theory, I am sure you are aware of the impacts of cost/benefit on species development. Is it true that sometimes a short term cost ends up having an effect of benefit to a species?
I hope this helps you to grasp a bit more my relating that God's moral judgment may not match moral judgment among humans, because it is derived from an entirely different perspective. You might think it odd that I call upon a character designed by a devout atheist (Asimov) to demonstrate that morality may be different given different perspectives, but I have a great degree of respect for the man's mind.
If there are other aspects you have concerns about, I will happily do my best to answer those as well.
Respectfully,
OldSoul